CDS

Accession Number TCMCG029C14376
gbkey CDS
Protein Id XP_023760716.1
Location complement(join(116301..116501,116583..116681,117642..118094,118177..118419,118496..119122,119212..119620,119702..119814,119928..120071,120176..120307,120399..120554))
Gene LOC111909160
GeneID 111909160
Organism Lactuca sativa

Protein

Length 858aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA432228
db_source XM_023904948.1
Definition vam6/Vps39-like protein isoform X4 [Lactuca sativa]

EGGNOG-MAPPER Annotation

COG_category U
Description Vam6 Vps39-like protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko04131        [VIEW IN KEGG]
KEGG_ko ko:K20183        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04138        [VIEW IN KEGG]
map04138        [VIEW IN KEGG]
GOs GO:0000323        [VIEW IN EMBL-EBI]
GO:0000325        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005764        [VIEW IN EMBL-EBI]
GO:0005765        [VIEW IN EMBL-EBI]
GO:0005768        [VIEW IN EMBL-EBI]
GO:0005770        [VIEW IN EMBL-EBI]
GO:0005773        [VIEW IN EMBL-EBI]
GO:0005774        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006906        [VIEW IN EMBL-EBI]
GO:0006914        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007033        [VIEW IN EMBL-EBI]
GO:0007034        [VIEW IN EMBL-EBI]
GO:0007041        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008333        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009705        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010008        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016050        [VIEW IN EMBL-EBI]
GO:0016192        [VIEW IN EMBL-EBI]
GO:0016197        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0030897        [VIEW IN EMBL-EBI]
GO:0031090        [VIEW IN EMBL-EBI]
GO:0031410        [VIEW IN EMBL-EBI]
GO:0031902        [VIEW IN EMBL-EBI]
GO:0031982        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034058        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044433        [VIEW IN EMBL-EBI]
GO:0044437        [VIEW IN EMBL-EBI]
GO:0044440        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0048284        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0061024        [VIEW IN EMBL-EBI]
GO:0061025        [VIEW IN EMBL-EBI]
GO:0061919        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090174        [VIEW IN EMBL-EBI]
GO:0097708        [VIEW IN EMBL-EBI]
GO:0098588        [VIEW IN EMBL-EBI]
GO:0098796        [VIEW IN EMBL-EBI]
GO:0098805        [VIEW IN EMBL-EBI]
GO:0098852        [VIEW IN EMBL-EBI]
GO:0098876        [VIEW IN EMBL-EBI]
GO:0099023        [VIEW IN EMBL-EBI]
GO:1902774        [VIEW IN EMBL-EBI]
GO:1990126        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTTGGTGTGGGGAAAACATATGTGTGGGAGTTAGAAGAGAATACACGATACTGAATGCCACAAATGGTGCACTATACGAGATCTTCCCATGGGGGAGGATTGCTCCACCTGTAATGGTGCCTCTTCCATCCGGAGAACTTCTTCTAGGGAAGGATAACCTTGGTGTGCTTGTAGATCAAAATGGTAAGCTCATTCAGGAAGGCAGAATTTGTTGGTCTGAGCCACCCTCAAGAGTTGTCATTCAGAAACCCTATGTTATTGCACTTTTACCAAAACACATTGAGATACGATCTTTGAGAGTCCCTTATCCACTGATACAAACTATTGTTCTACGCAATGTACGCCATATTCAACAAGGAAATAATGGGATTATCGTTTCCTTAGAAAGATGTTTATTTGGATTGTTCCCTGTTCCTCTTGGTGCACAGATTGTACAACTGACAGCATCTGGAAACTTTGAAGAAGCTTTAGTATTATGTAAGATGCTTCCACCAGAAGATTCAAGTCTACGAGCCTCAAAGGAGCAATCAATTCATATCAGATATGCACACTATCTGTTTGAAAACGATAGCTATGAAGAAGCCATGTATCATTTTGCAGCATCCCAAGTGGAAATAACCTATGTGCTTTCTTTATATCCATCTATTGTTCTTCCCAAACCAGTTGACAAAAGTACTGATGTTAGTGGGGAGTCGACCTTATCAAGAGTCAACTCTGGTACAACTGAATACTATACAGACAGTTCTCCAAGTTCTCAAATCAGTCAAATGGAATCTGATGACATTCCTGCTCTTGAACCCAAGAAAATGAACCACAATACTCTAACAGCTCTCATAAAATATTTGAAAAAAAAGAGGCCCAACATTGTTGGAAAGGCGGCTGCTGAAGGCACAGAGGAAGTTGTTTCAGATGCTGTGGGCCAGACTACACGTTCCAAGAAATCAAACAAGGGACGAGTTAATATTCCTACTGATTCTGGTGCTAGAGAGATAGCAGGAATATGTGACACTGCACTTCTGCAAGCTTTACTTTTGACTGGTCAAATTGTTGCTGTTTTGGAATTACTCAAGGGTTTTAACTACTGTGATATGAAGATATGTGAGGAGCTGTTGCAGAAAGGAAATCATGATGTTTGTTTGTTAGGGCTTTATAAATACAACTCAATGCATCGTGAAGCTCTTAAACTTCTTCATGAATTAGTGGAGGATTCCAAATTAGAACAACCCAAAATCACCACCAAGAATAAGTTCAAACCTGAGATGATAATCGACTATCTCAAAGTAAGTTCATACTTCTCTTATTATGTCAAACACAATCTAAGACAAAATGATGTTTTTGATGGTTTTCATATGCAGCCTTTATGTGGGATTGATCATATGCTTGTGTTAGAATTCTCAACATTTGTTCTTGAAAGTTGTCCTACAAAAACAATTGAGCTTTTTCTATCAGGAAATATCCCTGCAGATTTGGTTAATTCTTACCTAAAACAACATGCTCCTACATTACGTGCCACATATTTGGAACAAATGCTCTCAATGAATGAAGATGGAATCTCACCACATCTTCAAAATGAAATGGTGCAAATTTATCTTTCAGAAGTGCTTGATTGGCATGCTGACCTCACTGCTCAAAACAAGTGGGATGAAAAACTGTATATTCCACCAAGGAGAAAACTCATAACTGCATTACAGGGTATTTCAGAATATAATCCTGAAGCTTTTTTAAAAAGAATCCCACCAGATGCTTTATATGAAGAAAGGGCAATCTTATTAGGAAAAATGAATCAGCATGAACTCGCATTATCCATATACGTTCATAAGCTTCATGTTCCTGAATCGGCCCTATCGTATTGCGATCGAGTATACGAGTTGGGAGGAGCTCATCAACAATATGGAAAAGCTCAAGGAAACATATACTTAACTTTAATGCAAGTTTACATGAACCCTAGAAAAACAACGAAAAACATCGAAAAAAGGATCACGAATTTGGTGACTTCATCGAGCACTGGTAATTTGAAGAGTGCTTGGTCATCAGTTAGGGGTAAAGGAAAAGGGTTAGGTAAGAAGATTGTAGAGATAGAAAGCGCGGAAGATTCTAGAATGAAAGCAAGTAGTGGTGAATCTGGGAGAAGTGATTATGATACAGATGATGTTATTGAGGAAAGAAGCTCAACAGTTATGCTTGATGAAGTGCTGGATGTATTAAGTCAGAGGTGGGACCGGCTTCATGGAGCGAAAACTGTTAGACTCTTGCCTAAAGAGACTAAGCTACAGAGGTTGTTTCCATCTCTGGGACCACTCATGAAGAAGACGAGTGAATCATGTCGGAATTTTCAAGTGATCAAGAGTTTGAGACAATGTGAGAACCTACAGGTTAAAGACGATCTGTATAAGCAAAGAAAAGGAGAATTGAAGATCACGGGTGATAGTGTATGTTCCCTTTGCAATAAAAAGATTGGAACGAGTGTTTTTGCAGTGTATCCGAATGGAAACACCATTGTCCACTTTGTTTGTTTTCGTGACTCGCAGAACATGAAAGCCACCAGAAAAGGATCCTTTTTAAGGAAGCGATAA
Protein:  
MSWCGENICVGVRREYTILNATNGALYEIFPWGRIAPPVMVPLPSGELLLGKDNLGVLVDQNGKLIQEGRICWSEPPSRVVIQKPYVIALLPKHIEIRSLRVPYPLIQTIVLRNVRHIQQGNNGIIVSLERCLFGLFPVPLGAQIVQLTASGNFEEALVLCKMLPPEDSSLRASKEQSIHIRYAHYLFENDSYEEAMYHFAASQVEITYVLSLYPSIVLPKPVDKSTDVSGESTLSRVNSGTTEYYTDSSPSSQISQMESDDIPALEPKKMNHNTLTALIKYLKKKRPNIVGKAAAEGTEEVVSDAVGQTTRSKKSNKGRVNIPTDSGAREIAGICDTALLQALLLTGQIVAVLELLKGFNYCDMKICEELLQKGNHDVCLLGLYKYNSMHREALKLLHELVEDSKLEQPKITTKNKFKPEMIIDYLKVSSYFSYYVKHNLRQNDVFDGFHMQPLCGIDHMLVLEFSTFVLESCPTKTIELFLSGNIPADLVNSYLKQHAPTLRATYLEQMLSMNEDGISPHLQNEMVQIYLSEVLDWHADLTAQNKWDEKLYIPPRRKLITALQGISEYNPEAFLKRIPPDALYEERAILLGKMNQHELALSIYVHKLHVPESALSYCDRVYELGGAHQQYGKAQGNIYLTLMQVYMNPRKTTKNIEKRITNLVTSSSTGNLKSAWSSVRGKGKGLGKKIVEIESAEDSRMKASSGESGRSDYDTDDVIEERSSTVMLDEVLDVLSQRWDRLHGAKTVRLLPKETKLQRLFPSLGPLMKKTSESCRNFQVIKSLRQCENLQVKDDLYKQRKGELKITGDSVCSLCNKKIGTSVFAVYPNGNTIVHFVCFRDSQNMKATRKGSFLRKR